active_gm12878.tar.gz - Active motif sites for GM12878 inactive_gm12878.tar.gz - Inactive motif sites for GM12878 active_h1hesc.tar.gz - Active motif sites for H1-hESC inactive_h1hesc.tar.gz - Inactive motif sites for H1-hESC active_hepg2.tar.gz - Active motif sites for HepG2 inactive_hepg2.tar.gz - Inactive motif sites for HepG2 active_k562.tar.gz - Active motif sites for K562 inactive_k562.tar.gz - Inactive motif sites for K562 The tarballed and gzipped directories above contain the files listed below in a BED-like format and correspond to the training and test sets used in our footprinter comparison. The following are the column descriptions: 1. Chromosome 2. Motif start position (0-based inclusive) 3. Motif end position (0-based exclusive) 4. Motif name 5. PWM score output by FIMO 6. Strand 7. P-value output by FIMO Datasets: cebpb_gm12878_pos.bed - Active motif sites for CEBPB in GM12878 cebpb_gm12878_neg.bed - Inactive motif sites for CEBPB in GM12878 cebpb_h1hesc_pos.bed - Active motif sites for CEBPB in H1-hESC cebpb_h1hesc_neg.bed - Inactive motif sites for CEBPB in H1-hESC cebpb_hepg2_pos.bed - Active motif sites for CEBPB in HepG2 cebpb_hepg2_neg.bed - Inactive motif sites for CEBPB in HepG2 cebpb_k562_pos.bed - Active motif sites for CEBPB in K562 cebpb_k562_neg.bed - Inactive motif sites for CEBPB in K562 chd2_gm12878_pos.bed - Active motif sites for CHD2 in GM12878 chd2_gm12878_neg.bed - Inactive motif sites for CHD2 in GM12878 chd2_h1hesc_pos.bed - Active motif sites for CHD2 in H1-hESC chd2_h1hesc_neg.bed - Inactive motif sites for CHD2 in H1-hESC chd2_hepg2_pos.bed - Active motif sites for CHD2 in HepG2 chd2_hepg2_neg.bed - Inactive motif sites for CHD2 in HepG2 chd2_k562_pos.bed - Active motif sites for CHD2 in K562 chd2_k562_neg.bed - Inactive motif sites for CHD2 in K562 ctcf_gm12878_pos.bed - Active motif sites for CTCF in GM12878 ctcf_gm12878_neg.bed - Inactive motif sites for CTCF in GM12878 ctcf_h1hesc_pos.bed - Active motif sites for CTCF in H1-hESC ctcf_h1hesc_neg.bed - Inactive motif sites for CTCF in H1-hESC ctcf_hepg2_pos.bed - Active motif sites for CTCF in HepG2 ctcf_hepg2_neg.bed - Inactive motif sites for CTCF in HepG2 ctcf_k562_pos.bed - Active motif sites for CTCF in K562 ctcf_k562_neg.bed - Inactive motif sites for CTCF in K562 ep300_gm12878_pos.bed - Active motif sites for EP300 in GM12878 ep300_gm12878_neg.bed - Inactive motif sites for EP300 in GM12878 ep300_h1hesc_pos.bed - Active motif sites for EP300 in H1-hESC ep300_h1hesc_neg.bed - Inactive motif sites for EP300 in H1-hESC ep300_hepg2_pos.bed - Active motif sites for EP300 in HepG2 ep300_hepg2_neg.bed - Inactive motif sites for EP300 in HepG2 ep300_k562_pos.bed - Active motif sites for EP300 in K562 ep300_k562_neg.bed - Inactive motif sites for EP300 in K562 gabpa_gm12878_pos.bed - Active motif sites for GABPA in GM12878 gabpa_gm12878_neg.bed - Inactive motif sites for GABPA in GM12878 gabpa_h1hesc_pos.bed - Active motif sites for GABPA in H1-hESC gabpa_h1hesc_neg.bed - Inactive motif sites for GABPA in H1-hESC gabpa_hepg2_pos.bed - Active motif sites for GABPA in HepG2 gabpa_hepg2_neg.bed - Inactive motif sites for GABPA in HepG2 gabpa_k562_pos.bed - Active motif sites for GABPA in K562 gabpa_k562_neg.bed - Inactive motif sites for GABPA in K562 jund_gm12878_pos.bed - Active motif sites for JUND in GM12878 jund_gm12878_neg.bed - Inactive motif sites for JUND in GM12878 jund_h1hesc_pos.bed - Active motif sites for JUND in H1-hESC jund_h1hesc_neg.bed - Inactive motif sites for JUND in H1-hESC jund_hepg2_pos.bed - Active motif sites for JUND in HepG2 jund_hepg2_neg.bed - Inactive motif sites for JUND in HepG2 jund_k562_pos.bed - Active motif sites for JUND in K562 jund_k562_neg.bed - Inactive motif sites for JUND in K562 mafk_gm12878_pos.bed - Active motif sites for MAFK in GM12878 mafk_gm12878_neg.bed - Inactive motif sites for MAFK in GM12878 mafk_h1hesc_pos.bed - Active motif sites for MAFK in H1-hESC mafk_h1hesc_neg.bed - Inactive motif sites for MAFK in H1-hESC mafk_hepg2_pos.bed - Active motif sites for MAFK in HepG2 mafk_hepg2_neg.bed - Inactive motif sites for MAFK in HepG2 mafk_k562_pos.bed - Active motif sites for MAFK in K562 mafk_k562_neg.bed - Inactive motif sites for MAFK in K562 max_gm12878_pos.bed - Active motif sites for MAX in GM12878 max_gm12878_neg.bed - Inactive motif sites for MAX in GM12878 max_h1hesc_pos.bed - Active motif sites for MAX in H1-hESC max_h1hesc_neg.bed - Inactive motif sites for MAX in H1-hESC max_hepg2_pos.bed - Active motif sites for MAX in HepG2 max_hepg2_neg.bed - Inactive motif sites for MAX in HepG2 max_k562_pos.bed - Active motif sites for MAX in K562 max_k562_neg.bed - Inactive motif sites for MAX in K562 myc_gm12878_pos.bed - Active motif sites for MYC in GM12878 myc_gm12878_neg.bed - Inactive motif sites for MYC in GM12878 myc_h1hesc_pos.bed - Active motif sites for MYC in H1-hESC myc_h1hesc_neg.bed - Inactive motif sites for MYC in H1-hESC myc_hepg2_pos.bed - Active motif sites for MYC in HepG2 myc_hepg2_neg.bed - Inactive motif sites for MYC in HepG2 myc_k562_pos.bed - Active motif sites for MYC in K562 myc_k562_neg.bed - Inactive motif sites for MYC in K562 nrf1_gm12878_pos.bed - Active motif sites for NRF1 in GM12878 nrf1_gm12878_neg.bed - Inactive motif sites for NRF1 in GM12878 nrf1_h1hesc_pos.bed - Active motif sites for NRF1 in H1-hESC nrf1_h1hesc_neg.bed - Inactive motif sites for NRF1 in H1-hESC nrf1_hepg2_pos.bed - Active motif sites for NRF1 in HepG2 nrf1_hepg2_neg.bed - Inactive motif sites for NRF1 in HepG2 nrf1_k562_pos.bed - Active motif sites for NRF1 in K562 nrf1_k562_neg.bed - Inactive motif sites for NRF1 in K562 rad21_gm12878_pos.bed - Active motif sites for RAD21 in GM12878 rad21_gm12878_neg.bed - Inactive motif sites for RAD21 in GM12878 rad21_h1hesc_pos.bed - Active motif sites for RAD21 in H1-hESC rad21_h1hesc_neg.bed - Inactive motif sites for RAD21 in H1-hESC rad21_hepg2_pos.bed - Active motif sites for RAD21 in HepG2 rad21_hepg2_neg.bed - Inactive motif sites for RAD21 in HepG2 rad21_k562_pos.bed - Active motif sites for RAD21 in K562 rad21_k562_neg.bed - Inactive motif sites for RAD21 in K562 rest_gm12878_pos.bed - Active motif sites for REST in GM12878 rest_gm12878_neg.bed - Inactive motif sites for REST in GM12878 rest_h1hesc_pos.bed - Active motif sites for REST in H1-hESC rest_h1hesc_neg.bed - Inactive motif sites for REST in H1-hESC rest_hepg2_pos.bed - Active motif sites for REST in HepG2 rest_hepg2_neg.bed - Inactive motif sites for REST in HepG2 rest_k562_pos.bed - Active motif sites for REST in K562 rest_k562_neg.bed - Inactive motif sites for REST in K562 rfx5_gm12878_pos.bed - Active motif sites for RFX5 in GM12878 rfx5_gm12878_neg.bed - Inactive motif sites for RFX5 in GM12878 rfx5_h1hesc_pos.bed - Active motif sites for RFX5 in H1-hESC rfx5_h1hesc_neg.bed - Inactive motif sites for RFX5 in H1-hESC rfx5_hepg2_pos.bed - Active motif sites for RFX5 in HepG2 rfx5_hepg2_neg.bed - Inactive motif sites for RFX5 in HepG2 rfx5_k562_pos.bed - Active motif sites for RFX5 in K562 rfx5_k562_neg.bed - Inactive motif sites for RFX5 in K562 srf_gm12878_pos.bed - Active motif sites for SRF in GM12878 srf_gm12878_neg.bed - Inactive motif sites for SRF in GM12878 srf_h1hesc_pos.bed - Active motif sites for SRF in H1-hESC srf_h1hesc_neg.bed - Inactive motif sites for SRF in H1-hESC srf_hepg2_pos.bed - Active motif sites for SRF in HepG2 srf_hepg2_neg.bed - Inactive motif sites for SRF in HepG2 srf_k562_pos.bed - Active motif sites for SRF in K562 srf_k562_neg.bed - Inactive motif sites for SRF in K562 sp1_gm12878_pos.bed - Active motif sites for SP1 in GM12878 sp1_gm12878_neg.bed - Inactive motif sites for SP1 in GM12878 sp1_h1hesc_pos.bed - Active motif sites for SP1 in H1-hESC sp1_h1hesc_neg.bed - Inactive motif sites for SP1 in H1-hESC sp1_hepg2_pos.bed - Active motif sites for SP1 in HepG2 sp1_hepg2_neg.bed - Inactive motif sites for SP1 in HepG2 taf1_gm12878_pos.bed - Active motif sites for TAF1 in GM12878 taf1_gm12878_neg.bed - Inactive motif sites for TAF1 in GM12878 taf1_h1hesc_pos.bed - Active motif sites for TAF1 in H1-hESC taf1_h1hesc_neg.bed - Inactive motif sites for TAF1 in H1-hESC taf1_hepg2_pos.bed - Active motif sites for TAF1 in HepG2 taf1_hepg2_neg.bed - Inactive motif sites for TAF1 in HepG2 taf1_k562_pos.bed - Active motif sites for TAF1 in K562 taf1_k562_neg.bed - Inactive motif sites for TAF1 in K562 tbp_gm12878_pos.bed - Active motif sites for TBP in GM12878 tbp_gm12878_neg.bed - Inactive motif sites for TBP in GM12878 tbp_h1hesc_pos.bed - Active motif sites for TBP in H1-hESC tbp_h1hesc_neg.bed - Inactive motif sites for TBP in H1-hESC tbp_hepg2_pos.bed - Active motif sites for TBP in HepG2 tbp_hepg2_neg.bed - Inactive motif sites for TBP in HepG2 tbp_k562_pos.bed - Active motif sites for TBP in K562 tbp_k562_neg.bed - Inactive motif sites for TBP in K562 usf2_gm12878_pos.bed - Active motif sites for USF2 in GM12878 usf2_gm12878_neg.bed - Inactive motif sites for USF2 in GM12878 usf2_h1hesc_pos.bed - Active motif sites for USF2 in H1-hESC usf2_h1hesc_neg.bed - Inactive motif sites for USF2 in H1-hESC usf2_hepg2_pos.bed - Active motif sites for USF2 in HepG2 usf2_hepg2_neg.bed - Inactive motif sites for USF2 in HepG2 usf2_k562_pos.bed - Active motif sites for USF2 in K562 usf2_k562_neg.bed - Inactive motif sites for USF2 in K562